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Posts from the ‘23andMe’ Category

23andMe in Second Life: Today!

Just a quick reminder. 23andMe, one of the (if not the) most famous companies focusing on personalized genetics, will present a slideshow in Second Life in the next session of the Scifoo Lives On series.

  • Time: the 24th of June at 10:00 AM Pacific Time (= 17:00 GMT).
  • The speakers: Erin Davis (science writer) and Joyce Tung (human geneticist)
  • The title: 23andMe and 23andWe

If you would like to participate, here is the teleport link and some details as well.

I already set the poster up:

23andMe in Second Life

Just a quick reminder. 23andMe, one of the (if not the) most famous companies focusing on personalized genetics, will present a slideshow in Second Life in the next session of the Scifoo Lives On series.

  • Time: the 24th of June at 10:00 AM Pacific Time (= 17:00 GMT).
  • The speakers: Erin Davis (science writer) and Joyce Tung (human geneticist)
  • The title: 23andMe and 23andWe

If you would like to participate, here is the teleport link and some details as well.

I’m looking forward to meeting you inside Second Life.

23andMe in Second Life!

After months of e-mails and talks, now it is official: 23andMe, one of the (if not the) most famous companies focusing on personalized genetics, will present a slideshow in Second Life in the next session of the Scifoo Lives On series on the 24th of June at 10:00 AM Pacific Time (= 17:00 GMT).

I’m really happy because they have the potential to prove the advantages of Second Life in global communication. And 23andMe will be the first genetic company to give a talk in the virtual world. They seem to be quite open to the web 2.0 world as they will be one of the sponsors for the BioBarCamp that is a more than interesting unconference organized be Attila Csordás (unfortunately, I live in the other side of the world…).

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If you would like to participate:

That’s all. If you can’t have access to Second Life (due to graphic card problems, e.g.), don’t worry, I will blog live about the whole event.

The Scifoo Lives On series is a continuation of the SciFoo conference in Second Life.

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A screenshot of one of our past events focusing on web 2.0 and medicine

Some past events:

New Genome Browser from DecodeMe

I’ve already analyzed the genome browser of 23andMe, one of the best known personalized genetic companies. Now here is the new genome browser of DecodeMe, another famous company. You open the browser:

Then you can choose which SNPs you are interested in:

It looks impressive. Give it a try and let me know your feedback.

Further reading:

What you have to know about personalized genetics

Genes load the gun. Lifestyle pulls the trigger.

By Dr. Elliot Joslin

I’ve written at least a hundred times about personalized medicine so it’s the perfect time to come up with a short description of what individualized medicine is about. In this new world of medicine, you get a treatment that is not only based on the epidemiological data of your population, but your own genetic background. But let’s start with a more appropriate definition:

Personalized medicine is use of information and data from a patient’s genotype, level of gene expression and/or other clinical information to stratify disease, select a medication, provide a therapy, or initiate a preventative measure that is particularly suited to that patient at the time of administration. Personalized medicine makes it possible to give: “the appropriate drug, at the appropriate dose, to the appropriate patient, at the appropriate time”. The benefits of this approach are in its accuracy, efficacy, safety and speed.

All right, here is an even shorter one.

…turning genetic variations associated with population-level risks of disease into medically advice useful for a single person sitting in an exam room.

We can also watch it on video:

Who are the key players?

23andMe: Single Nucleotide Polymorphism and genealogy analysis for 1000$. Check out my review or the demo account I created.

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Knome: Whole-genome sequencing for 350,000$. Check out my review.

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Navigenics: Will launch the service in days. My review is here.
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Helix Health: A New York company founded by our gene sherpa, Steve Murphy, who answered my questions some months ago. Helix Health focuses on the family history of the patient and their genetic background as well. Genetic counselors discuss the disease-specific risks with the patients.

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DecodeMe: It analyzes over one million variants in our genomes; calculates genetic risk for 23 diseases and finds our ancestors for $985.

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Who and what do stand behind the whole concept?

Archon X PRIZE for Genomics: The $10 million X PRIZE for Genomics prize purse will be awarded to the first Team that can build a device and use it to sequence 100 human genomes within 10 days or less, with an accuracy of no more than one error in every 100,000 bases sequenced, with sequences accurately covering at least 98% of the genome, and at a recurring cost of no more than $10,000 per genome.

The aim is the 1000$ genome.

Craig Venter’s genome that was published in September, 2007.

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Who and what should you follow to know everything about personalized medicine?

Personalized Genetics: The User Aspect

As personalized genetics is still rising, users start to write more and more posts about these genetic services. And this user aspect should and will play a major role in the future of genomic medicine.

Do not trust any genetic testing company that does not make it clear what genetic variants they are analyzing. Never let anyone take your DNA unless they are clear about what they plan to do with it, what information they will give you from the analysis, and what they’ll do with the DNA after all the testing is complete. You are the consumer. You have the right to choose and the right to say no.

  • Steve Murphy asks an interesting questions. So what if we have a 1000 USD genome? What would we have? I guess only one thing would change: we would have our genomes on a USB drive. That’s all. The medical aspect couldn’t change in such a short period of time. We still need years of research to be able to use properly that amount of genomic data.

While writing your answer in the comment section, listen to a presentation about Decision Making in the Genomic Era:

Demo Account at 23andMe: Analyze Your Demo Genes!

I thought I should create an account at 23andMe and see what happens with my demo genes. Of course, you cannot analyze your own genes (or you can, if you ordered their service), but the genetic background of the Mendel-family. I started with the Gene Journal where you can check whether you have elevated risk for some specific medical conditions.

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It’s not so easy to tell you your exact risk, because even if some single nucleotide polymorphisms (SNP) in your genome indicate an elevated risk for heart disease for example, there might be some others SNPs we don’t know yet which lower your risk. So it’s really hard to give you a reliable result. That’s why it would be so important to talk with a geneticist about your genomic data. As your doctor won’t send you your lab results to analyze at home, your genomic data should be examined by a physician as well.

So here are the medical conditions they analyze (among others):

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Research confidence is crucial. What does it mean?

Established Research topics meet 23andMe’s criteria for findings that are very likely to reflect real effects. The scientific community has largely reached consensus on these topics.

Generally, associations in these topics were discovered in studies of at least 1,000 cases and 1,000 controls and then replicated in a second, independent study of similar size. However, we may also include associations discovered in smaller studies if the scientific community has reached broad consensus that the effect is real.

You can browse your genome by body parts or organ systems if you wish:

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Then I switched to Ancestry where you can explore your origins through DNA. In the Maternal Ancestry page, there is a map showing the locations of your haplogroup. What is a haplogroup? 23andMe has the answer:

Haplogroups are families of mitochondrial DNA types that all trace back to a single mutation at a specific place and time. Technically, every new mutation creates a new haplogroup, but geneticists only label the ones that help them trace significant events in human prehistory, such as the migration of people to the Americas or the expansion of agriculture from the Near East.

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But my favourite tool is the Family Inheritance where you can browse among the genomes of the members of your family. Just compare your immune system compatibility to your sister’s or compare any set of genes.

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After that, in the Genome Labs, make some genome-wide comparisons like this one in the Mendel family so you can find out how similar you are with your father or mother.

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Then don’t forget to browse your own SNPs gene by gene.

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At last, download your own data which would take about 5MB.

To sum it up, the whole site is colorful, these tools are easy to use, but after getting an e-mail about my genomic data and logging onto the site, I would like to talk with a geneticist because these results might lead to medical decisions and these decisions should be made by medical professionals and should be based on peer-reviewed data and evidence-based medicine, and not online tutorials.

Further reading:

23andMe in Europe: Donation makes sense!

Today, Hsien-Hsien Lei at Eye on DNA shared an important announcement with us. 23andMe services are now available in Canada and Europe (press release).

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It means my donation campaign just makes sense now. Please donate to have my genome sequenced.

Anyway, we have an other blog to follow,  The Spittoon from the 23andMe team.

Further reading:

Personal Genome Explorer at Home: How to analyze the results of your genome?

The Idea of the Month Award should certainly be given to Andrew Scheidecker who created a personal genome explorer tool in order to analyze his own data from 23andMe. But let’s read his explanation:

At the time, 23andme’s website didn’t allow you to download the data they gathered from your DNA; my first goal was to write a tool that would allow you to do that. The tool connects to their website via HTTP and parses the raw data from the HTML pages. This doesn’t violate their terms of service and shouldn’t overload their servers; a maximum of 2 simultaneous connections is used by the tool.

The raw data it reads is in the form of a mapping from Single Nucleotide Polymorphisms that 23andme tests (around 600,000 SNPs) to the genotype of that SNP that you matched. It will take a few hours for it to download your data; it’s spread out over thousands of HTML pages.

The traits analyzed are taken from SNPedia; if you see any errors, please update the relevant page on SNPedia.

If we talk about 23andMe, here are the latest updates from Blaine Bettinger, the genetic genealogist.

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And you really should take a look at this story written by a new 23andMe customer. I just loved this part:

So how does it feel? It feels a bit scary, actually. I wasn’t expecting the degree of approach-avoidance that I felt, looking at that little plastic tube … and then looking at the fedex envelope to ship it off. I know better than most people that “genetics is not destiny,” … and I’ve been saying for a long time that more accurate information *always* leads to superior decision making. Still … do I really want to know about Hodgkin’s?

Yes. Yes I do.

Anyway, the 23andMe company will hold a press meeting at World Economic Forum Annual Meeting in Davos, Switzerland on Wednesday, January 23rd.

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This is the future? (Image Credit: cdwan.org)

Further reading:

Personalized Genetics: The last words in 2007

I promise these will be the last words about personalized genetics thiy year. The “hypest” topic of 2007 was individualized medicine, no doubt about it.

When I first read the announcement of 23andMe, I wanted to use their service, but as a European, it’s still impossible. So here are others who have recently recieved their results.

Have you been thinking about the medical breakthroughs of the year? Well, Science described some of them:

Individualized medicine has serious scientific aspects:

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And let’s finish the year with reviews of 2 services:

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